FAT32 does not support symlinks, so I wonder if there's going to be a problem with that.

Generally speaking, I am wondering about portability of git annex on windows and on android...

See fat support. A bare git repo will have to be used to avoid symlink problems, at least for now. The other problem is that git-annex key files have colons in their filenames.
Comment by http://joey.kitenet.net/ Mon Mar 7 19:13:14 2011
Now it's fully supported, so long as you put a bare git repo on your key.
Comment by http://joey.kitenet.net/ Sat Mar 19 15:37:22 2011
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